Search Results

Your Query: Experimental

Found Studies

44
Mdb ID Title Host Species Parasite Species

2020

1 2020_6
Details
DOI -
Open Access
Experimental infection with the hookworm, Necator americanus, promotes gut microbial diversity in human volunteers with relapsing multiple sclerosis None None
Authors
Timothy Jenkins, David Pritchard, Radu Tanasescu, Gary Telford, Marina Paraiakovou, Cris Constantinescu, Cinzia Cantacessi
Host Species
None
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Mendeley
Journal
TODO
Project Number
10.17632/pkk4vtc57r.1
2 2020_5
Details
DOI -
Open Access
Infection with the sheep gastrointestinal nematode Teladorsagia circumcincta increases luminal pathobionts None None
Authors
Alba Cortés, John Wills, Xiaopei Su, Rachel E. Hewitt, Jack Robertson, Riccardo Scotti, Daniel R. G. Price, Yvonne Bartley, Tom N. McNeilly, Lutz Krause, Jonathan J. Powell, Alasdair J. Nisbet, Cinzia Cantacessi
Host Species
None
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
TODO
Project Number
PRJEB33114
3 2020_4
Details
DOI -
Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice. None None
Authors
Adam Shute, Arthur Wang, Timothy S. Jayme, Marc Strous, Kathy D. McCoy, Andre G. Buret, Derek M. McKay
Host Species
None
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
Gut Microbes
Project Number
missing
4 2020_3
Details
DOI -
The gut microbiota response to helminth infection depends on host sex and genotype. None None
Authors
Fei Ling, Natalie Steinel, Jesse Weber, Lei Ma, Chris Smith, Decio Correa, Bin Zhu, Daniel Bolnick & Gaoxue Wang
Host Species
None
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
SRA
Journal
The ISME Journal
Project Number
PRJNA398629 and PRJNA398630
5 2020_2
Details
DOI -
Open Access
Infection with a small intestinal helminth, Heligmosomoides polygyrus bakeri, consistently alters microbial communities throughout the murine small and large intestine. None None
Authors
Alexis Rapin, Audrey Chuat, Luc Lebon, Mario M. Zaiss, Benjamin J. Marsland, Nicola L. Harris
Host Species
None
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
International Journal for Parasitology
Project Number
PRJEB32288
6 2020_1
Details
DOI -
Gut microbial signatures associated with moxidectin treatment efficacy of Haemonchus contortus in infected goats. None None
Authors
Fang Liu, Yue Xie, Anne M.Zajac, Yan Hu, Raffi V.Aroian, Joseph F.Urban Jr., Robert W.Li
Host Species
None
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
None
Profiling Method
Whole metagenome shotgun sequencing (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
TODO
Project Number
PRJNA564780

2019

7 2019_6
Details
DOI -
Schistosoma mansoni worm infection regulates the intestinal microbiota and susceptibility to colitis None None
Authors
Achilleas Floudasa, Gabriella Avielloa, Christian Schwartza, Ian B. Jefferyb, Paul W. O'Tooleb and Padraic G. Fallon
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Not assessed
Richness Not assessed
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
TODO
Project Number
New project number
8 2019_5
Details
DOI -
Contribution of the gut microbiota in P28GST-mediated anti-inflammatory effects: experimental and clinical insights None None
Authors
Benoît Foligné , Coline Plé, Marie Titécat, Arnaud Dendooven, Aurélien Pagny, Catherine Daniel, Elisabeth Singer, Muriel Pottier, Benjamin Bertin, Christel Neut, Dominique Deplanque, Laurent Dubuquoy, Pierre Desreumaux, Monique Capron, Annie Standaert
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
9 2019_4
Details
DOI -
Microbiome analysis as a platform R&D tool for parasitic nematode disease management None None
Authors
Glenn Hogan, Sidney Walker, Frank Turnbull, Tania Curiao, Alison A. Morrison, Yensi Flores, Leigh Andrews, Marcus J. Claesson, Mark Tangney, Dave J. Bartley
Host Species
None
Control Species
Sheep (Ovis aries)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
TODO
Project Number
New project number
10 2019_3
Details
DOI -
Chinese liver fluke Clonorchis sinensis infection changes the gut microbiome and increases probiotic Lactobacillus in mice None None
Authors
Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
Parasitology Research
Project Number
Unavailable
11 2019_20
Details
DOI -
Open Access
Trichinella spiralis infection decreases the diversity of the intestinal flora in the infected mouse. None None
Authors
Sha Liu, Jin Pan, Xiangli Meng, Junping Zhu, Jie Zhou, Xinping Zhu
Host Species
None
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
PRJNA479716 and PRJNA553325
12 2019_17
Details
DOI -
Ascaris suum infection was associated with a worm-independent reduction in microbial diversity and altered metabolic potential in the porcine gut microbiome. None None
Authors
Yueying Wang, Fang Liu, Joseph F. UrbanJr., Oonagh Paerewijck, Peter Geldhof, Robert W.Li
Host Species
None
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
International Journal for Parasitology
Project Number
SRP127199
13 2019_16
Details
DOI -
Open Access
Cognitive and Microbiome Impacts of Experimental Ancylostoma ceylanicum Hookworm Infections in Hamsters None None
Authors
Samuel C. Pan, Doyle V. Ward, Yunqiang Yin, Yan Hu, Mostafa A. Elfawal, Robert E. Clark, and Raffi V. Aroian
Host Species
None
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
Scientific Reports
Project Number
PRJNA535443
14 2019_15
Details
DOI -
Open Access
Sequential Changes in the Host Gut Microbiota During Infection With the Intestinal Parasitic Nematode Strongyloides venezuelensis None None
Authors
Tanzila Afrin, Kazunori Murase, Asuka Kounosu, Vicky L. Hunt, Mark Bligh, Yasunobu Maeda, Akina Hino, Haruhiko Maruyama, Isheng J. Tsai, and Taisei Kikuchi
Host Species
None
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
SAMD00148911
15 2019_14
Details
DOI -
Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis None None
Authors
Laura J. Myhill, Sophie Stolzenbach, Tina V. A. Hansen, Kerstin Skovgaard, C. Rune Stensvold, Lee O'Brien Andersen, Peter Nejsum, Helena Mejer, Stig M. Thamsborg, Andrew R. Williams
Host Species
None
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Immunology
Project Number
PRJEB29079
16 2019_12
Details
DOI -
Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection None None
Authors
María A. Duque-Correa , Natasha A. Karp, Catherine McCarthy, Simon Forman, David Goulding, Geetha Sankaranarayanan, Timothy P. Jenkins, Adam J. Reid, Emma L. Cambridge, Carmen Ballesteros Reviriego, The Sanger Mouse Genetics Project, The 3i consortium , Werner Müller, Cinzia Cantacessi, Gordon Dougan, Richard K. Grencis, Matthew Berriman
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
ERP016361
17 2019_11
Details
DOI -
The parasitic worm product ES-62 normalises the gut microbiota bone marrow axis in inflammatory arthritis None None
Authors
James Doonan, Anuradha Tarafdar, Miguel A. Pineda, Felicity E. Lumb, Jenny Crowe, Aneesah M. Khan, Paul A. Hoskisson, Margaret M. Harnett, William Harnett
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of 16S rRNA amplicons (Ion Torrent)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
mgm4777616.3, 4777615.3, 4777614.3, 4777613.3, 4777481.3, 4777480.3, 4777479.3, 4777478.3, 4767994.3, 4767993.3, 4767992.3, 4767991.3, 4767990.3, 4767989.3, 4767988.3, 4767987.3, 4767986.3, 4738191.3, 4738190.3, 4738025.3, 4737887.3, 4737053.3 and 4737052.3
18 2019_10
Details
DOI -
Open Access
Suppression of obesity by an intestinal helminth through interactions with intestinal microbiota None None
Authors
Chikako Shimokawa, Seiji Obi, Mioko Shibata, Alex Olia, Takashi Imai, Kazutomo Suzue, Hajime Hisaeda
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Not assessed
Richness Not assessed
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
Infection and Immunity (WAS: American Society for Microbiology Journals)
Project Number
New project number

2018

19 2018_9
Details
DOI -
Intestinal fluke Metagonimus yokogawai infection increases probiotic Lactobacillus in mouse cecum None None
Authors
Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Experimental Parasitology
Project Number
SRP154312
20 2018_4
Details
DOI -
Open Access
Helminth-induced alterations of the gut microbiota exacerbate bacterial colitis None None
Authors
Su C, Su L, Li Y, Long SR, Chang J, Zhang W, Walker WA, Xavier RX, Cherayil BJ, Shi HN
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
Mucosal Immunology
Project Number
Unavailable
21 2018_2
Details
DOI -
Open Access
Schistosoma mansoni infection is associated with quantitative and qualitative modifcations of the mammalian intestinal microbiota None None
Authors
Jenkins TP, Peachey LE, Ajami NJ, MacDonald AS, Hsieh MH, Brindley PJ, Cantacessi C, Rinaldi G
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
10.17632/y8c7vpc8zp.1
22 2018_13
Details
DOI -
Open Access
Manipulation of host and parasite microbiotas: survival strategies during chronic nematode infection None None
Authors
White EC, Houlden A, Bancroft AJ, Hayes KS, Goldrick M, Grencis RK, Roberts IS
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Science Advances
Project Number
PRJEB12611
23 2018_12
Details
DOI -
The benign helminth Hymenolepis diminuta ameliorates chemically induced colitis in a rat model system None None
Authors
Pomajbíková KJ, Jirků M, Levá J, Sobotková K, Morien E, Parfrey LW
Host Species
None
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Parasitology
Project Number
PRJEB25354
24 2018_10
Details
DOI -
Open Access
Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis None None
Authors
Myhill LJ, Stolzenbach S, Hansen TVA, Skovgaard K, Stensvold CR, O'Brien Andersen L, Nejsum P, Mejer H, Thamsborg SM, Williams AR
Host Species
None
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Immunology
Project Number
PRJEB29079

2017

25 2017_3
Details
DOI -
Microbial community and ovine host response varies with early and late stages of Haemonchus contortus infection None None
Authors
El-Ashram S, Al Nasr I, Abouhaje F, El-Kemary M, Huang G, Dinçel G, Mehmood R, Hu M, Suo X
Host Species
None
Control Species
Sheep (Ovis aries)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
Veterinary Research Communications
Project Number
Unavailable
26 2017_2
Details
DOI -
Open Access
A benign helminth alters the host immune system and the gut microbiota in a rat model system None None
Authors
Wegener Parfrey L, Jirků M, Šíma R, Jalovecká M, Sak B, Grigore K, Jirků Pomajbíkova K
Host Species
None
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP014631

2016

27 2016_5
Details
DOI -
Got worms? Perinatal exposure to helminths prevents persistent immune sensitization and cognitive dysfunction induced by early-life infection None None
Authors
Williamson LL, McKenney EA, Holzknecht ZE, Belliveau C, Rawls JF, Poulton S, Parker W, Bilbo SD
Host Species
None
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Not assessed
Richness Not assessed
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
Brain, Behavior, and Immunity
Project Number
Unavailable
28 2016_3
Details
DOI -
Open Access
The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome None None
Authors
Li RW, Li W, Sun J, Yu P, Baldwin RL, Urban JF Jr
Host Species
None
Control Species
Alpine Goat (Capra aegagrus hircus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
MG-RAST
Journal
Scientific Reports
Project Number
mgp13390; mgm4629311.3 to mgm4629350.3
29 2016_2
Details
DOI -
Open Access
Impact of helminth infections and nutritional constraints on the small intestine microbiota None None
Authors
Cattadori IM, Sebastian A, Hao H, Katani R, Albert I, Eilertson KE, Kapur V, Pathak A, Mitchell S
Host Species
None
Control Species
Rabbits (Oryctolagus cuniculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
PLoS One
Project Number
Unavailable
30 2016_1
Details
DOI -
Open Access
Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease None None
Authors
Giacomin P, Zakrzewski M, Jenkins TP, Su X, Al-Hallaf R, Croese J, de Vries S, Grant A, Mitreva M, Loukas A, Krause L, Cantacessi C
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Scientific Reports
Project Number
SRP078558

2015

31 2015_6
Details
DOI -
Open Access
Alteration of the rat cecal microbiome during colonization with the helminth Hymenolepis diminuta None None
Authors
McKenney EA, Williamson L, Yoder AD, Rawls JF, Bilbo SD, Parker W
Host Species
None
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Gut Microbes
Project Number
PRJNA270622
32 2015_4
Details
DOI -
Open Access
Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis None None
Authors
Fricke WF, Song Y, Wang AJ, Smith A, Grinchuk V, Pei C, Ma B, Lu N, Urban JF Jr, Shea-Donohue T, Zhao A
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Microbiome
Project Number
PRJNA255974
33 2015_3
Details
DOI -
Open Access
Chronic Trichuris muris infection in C57BL/6 mice causes significant changes in host microbiota and metabolome: effects reversed by pathogen clearance None None
Authors
Houlden A, Hayes KS, Bancroft AJ, Worthington JJ, Wang P, Grencis RK, Roberts IS
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP008663
34 2015_2
Details
DOI -
Open Access
Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli None None
Authors
Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP006108
35 2015_1
Details
DOI -
Open Access
Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects None None
Authors
Giacomin P, Zakrzewski M, Croese J, Su X, Sotillo J, McCann L, Navarro S, Mitreva M, Krause L, Loukas A, Cantacessi C
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Scientific Reports
Project Number
SRP059769

2014

36 2014_3
Details
DOI -
Open Access
Commensal–pathogen interactions in the intestinal tract: Lactobacilli promote infection with, and are promoted by, helminth parasites None None
Authors
Reynolds LA, Smith KA, Filbey KJ, Harcus Y, Hewitson JP, Redpath SA, Valdez Y, Yebra MJ, Finlay BB, Maizels RM
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
Gut Microbes
Project Number
N/A (clone library)
37 2014_2
Details
DOI -
Open Access
Impact of experimental hookworm infection on the human gut microbiota None None
Authors
Cantacessi C, Giacomin P, Croese J, Zakrzewski M, Sotillo J, McCann L, Nolan MJ, Mitreva M, Krause L, Loukas A
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
The Journal of Infectious Diseases
Project Number
SRP041283

2013

38 2013_3
Details
DOI -
Open Access
Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome None None
Authors
Plieskatt JL, Deenonpoe R, Mulvenna JP, Krause L, Sripa B, Bethony JM, Brindley PJ
Host Species
None
Control Species
Hamster (Mesocricetus auratus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
The FASEB Journal
Project Number
PRJNA188112
39 2013_2
Details
DOI -
Open Access
Small intestinal nematode infection of mice is associated with increased enterobacterial loads alongside the intestinal tract None None
Authors
Rausch S, Held J, Fischer A, Heimesaat MM, Kühl AA, Bereswill S, Hartmann S
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
Bacterial 16S rRNA qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
PLoS One
Project Number
N/A

2012

40 2012_3
Details
DOI -
Open Access
Alterations in the porcine colon microbiota induced by the gastrointestinal nematode Trichuris suis None None
Authors
Li RW, Wu S, Li W, Navarro K, Couch RD, Hill D, Urban JF Jr.
Host Species
None
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
None
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Infection and Immunity (WAS: American Society for Microbiology Journals)
Project Number
PRJNA518074
41 2012_2
Details
DOI -
Open Access
Worm burden-dependent disruption of the porcine colon microbiota by Trichuris suis infection None None
Authors
Wu S, Li RW, Li W, Beshah E, Dawson HD, Urban JF Jr
Host Species
None
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
None
Profiling Method
Whole metagenome shotgun sequencing (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
MG-RAST
Journal
PLoS One
Project Number
4474250.3 to 4474257.3, 4474259.3, 4474261.3 and 4474262.3
42 2012_1
Details
DOI -
Open Access
Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon None None
Authors
Broadhurst MJ, Ardeshir A, Kanwar B, Mirpuri J, Gundra UM, Leung JM, Wiens KE, Vujkovic-Cvijin I, Kim CC, Yarovinsky F, Lerche NW, McCune JM, Loke P
Host Species
None
Control Species
Macaca mulatta - captive
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
PLoS Pathogens
Project Number
N/A

2011

43 2011_1
Details
DOI -
Open Access
Metagenome plasticity of the bovine abomasal microbiota in immune animals in response to Ostertagia ostertagi Infection None None
Authors
Li RW, Wu S, Li W, Huang Y, Gasbarre LC
Host Species
None
Control Species
Cattle (Bos taurus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PLoS One
Project Number
PRJNA518072

2010

44 2010_1
Details
DOI -
Alteration of the murine gut microbiota during infection with the parasitic helminth Heligmosomoides polygyrus None None
Authors
Walk ST, Blum AM, Ang-Sheng S, Weinstock JV, Young VB
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
Inflammatory Bowel Diseases
Project Number
N/A (qPCR)